CESSHIV-1 database

General information on HIV-1 isolate

# 2449

Accession number	L28881
Name	3A4LTR
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	3

L28881 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacccct ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

L28900(#2468) L28901(#2469)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy