CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 5
Accession number M17451
Name RF, HAT-3
SubtypeB
CountryUSA (Haiti)
Sampling year 1983
PatientRF

M17451 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacctct ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggaccagaa agcgaaagta gaaccagagg agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy