CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3340
Accession number M64581
Name A21
Subtype
Country
Submitted to NCBI 1991

M64581 isolate has foldings of [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcc-tacc acacacaagg ctacttccct gattggcaga actacacacc agggccaggg at-cagata

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

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