CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 5001
Accession number PBS-02RU832
Name 02RU832-PBS-(EU938093/FJ437008)
Subtype
Country
Submitted to NCBI

PBS-02RU832 isolate has foldings of [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtatga ctctggtaac tagagatccc tcaaaccact ctaggcggtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtt---c cagaggagtt ctctcgacgc aggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy