CESSHIV-1 database

General information on HIV-1 isolate

# 5024

Accession number	PBS-03RU1098
Name	03RU1098-PBS-(EU938102/FJ503055)
Subtype
Country
Submitted to NCBI

PBS-03RU1098 isolate has foldings of [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtatga ctctggtaac tagagatccc tcagaccact ctaggcggtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtt---c cagagaagtt ctctcgacgc aggac

Isolates with identical sequences of region:

PBS-97RU260(#5007) PBS-98RU365(#5003) PBS-99RU532(#5020) PBS-99RU553(#5019)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy