CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 5012
Accession number PBS-03RU993
Name 03RU993-PBS-(EU938097/FJ437019)
Subtype
Country
Submitted to NCBI

PBS-03RU993 isolate has foldings of [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtatga ctctggtaac tagagatccc tcagaccact ctaggcggtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gagaaagt----cc agagaagttc tctcgacgca ggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy