CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 5002
Accession number PBS-97RU207
Name 97RU207-PBS-(EU938092/FJ437009)
Subtype
Country
Submitted to NCBI

PBS-97RU207 isolate has foldings of [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtatga ctctggtaac tagagatccc tcaaaccact ctaggcgggg ta-aaaatctc tagcaggggc gcccgaacag ggactcgaaa gcgaaagtt---c cagagaagtt ctctcgacgc aggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy