CESSHIV-1 database

General information on HIV-1 isolate

# 2503

Accession number	U51283
Name	92RW020_a
Subtype	A
Country	Rwanda
Sampling year	1992
Patient	RW020

U51283 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagaaggtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtt---c cagagaagtt ctctcgacgc aggac

Isolates with identical sequences of region:

AF239630(#1952) AF239649(#1971)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy