CESSHIV-1 database

General information on HIV-1 isolate

# 2515

Accession number	U51296
Name	93th966
Subtype	CRF01_AE
Country	Thailand
Sampling year	1993
Patient	966

U51296 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgtgttagga ctctggtaac tagagatccc tcagaccact ctagactgag ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtta atagggactc gaaagcgaaa gtt---ccagaga agttctctcg acgcaggac

Isolates with identical sequences of region:

AB052602(#1058) AB052604(#1060) AB070352(#163) AB220946(#729) AF170549(#1400) EF036530(#852) U51188(#369) U51284(#2504) U51297(#2516) U67767(#2518) U67769(#2520)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing PBS domain

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy