CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 35
Accession number U54771
Name CM240
SubtypeCRF01_AE
CountryThailand
Sampling year 1990
PatientCM240

U54771 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgtgttagga ctctggtaac tagagatccc tcagaccact ctagactgag ta-aaaatctc taccagtggc gcccgaacag ggcactcgaa agcgaaagtt aatagggact cgaaagcgaa agttccagag aagttctctc gacgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012