CESSHIV-1 database

General information on HIV-1 isolate

# 257

Accession number	U69587
Name	WCIPR clone 52
Subtype	B
Country	USA
Sampling year	1985
Patient	WC1-001

U69587 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tgaaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagag aaaccagaga agctctctcg acgcaggac

Isolates with identical sequences of region:

U69586(#256) U69588(#258)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy