CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2555
Accession number U80536
Name TPX
SubtypeB
CountryVenezuela
Sampling year 1995
PatientTP10

U80536 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagaaatccc tcagaccctt ttagtcagtg tggaaaattt ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta aaaccggagg agctctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy