CESSHIV-1 database

General information on HIV-1 isolate

# 2594

Accession number	U89861
Name	L_12
Subtype	B
Country	Italy
Sampling year	1996
Patient	SG1

U89861 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagag aaaccagag---c tctctcgacg caggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy