CESSHIV-1 database

General information on HIV-1 isolate

# 1363

Accession number	AB191673
Name	00ZM-M2
Subtype	C
Country	Zambia
Sampling year	2000

AB191673 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctcg ctaggtagac cagatttgag cctgggagct ctctggctat ctagtgaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB191676(#1366)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy