CESSHIV-1 database

General information on HIV-1 isolate

# 795

Accession number	AB253672
Name	pJPDR3730AE11
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	NH2000-001

AB253672 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac caggtc-gagc ccgggagctc tctggctagc aggggaaccc actgcttaag cctcaataaa gcttgccttg agtgcttaaa gtggtgtgtg cccatttgtg tcaggactct ggtaa

Isolates with identical sequences of region:

AB253636(#759) AB253638(#761) AB253645(#768) AB253665(#788) AB253666(#789) AB253667(#790) AB253669(#792) AB253670(#793) AB253671(#794) AB253673(#796) AB253674(#797) AB253675(#798) AB253676(#799) AB253677(#800) AB253678(#801) AB253679(#802) AB253680(#803)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy