CESSHIV-1 database

General information on HIV-1 isolate

# 943

Accession number	AB286853
Name	p0303GH195AG/06_44
Subtype	0206
Country	Ghana
Sampling year	2003
Patient	195

AB286853 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagattggag cctgggagct ctctggctag c-agaggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB286863(#919)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Core poly(A) site

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy