CESSHIV-1 database

General information on HIV-1 isolate

# 1938

Accession number	AF096657
Name	TZB0052
Subtype	D
Country	Tanzania
Sampling year	1996
Patient	52

AF096657 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagatttgag cctgagagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtg--actctg gtaa

Isolates with identical sequences of region:

AF096654(#1935) AF254689(#1478) AF254721(#1509) AY932687(#2157)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy