CESSHIV-1 database

General information on HIV-1 isolate

# 1972

Accession number	AF239650
Name	PAIR17_INFANT
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	17-baby

AF239650 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctgggtagac cagatctgag cctgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB191659(#1023) AB485644(#2724) AB485645(#2725) AB485646(#2726) AF239633(#1955) AF239645(#1967) AF254716(#1504) AY610960(#1994) AY610985(#3142) AY921353(#2113) AY932690(#2160) AY932699(#2169) AY932726(#2034) AY932727(#2050)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy