CESSHIV-1 database

General information on HIV-1 isolate

# 1518

Accession number	AF254731
Name	E34_2
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	34

AF254731 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagatttgag cctgagagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AF239634(#1956) AF239640(#1962) AF254707(#1495)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy