CESSHIV-1 database

General information on HIV-1 isolate

# 295

Accession number	AJ508596
Name	00NE95
Subtype	0206
Country	Niger
Sampling year	2000

AJ508596 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagattcgag cctgggagct ctctgactag caggggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttac agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy