CESSHIV-1 database

General information on HIV-1 isolate

# 1551

Accession number	AM076850
Name	PG5_38
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG5

AM076850 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatctgag cctgggagct ctctggctac ttagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AM076848(#1548) AM076849(#1549)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy