CESSHIV-1 database

General information on HIV-1 isolate

# 3180

Accession number	AY047304
Name	TV014
Subtype	C
Country	South Africa (Namibia)
Sampling year	1998
Patient	TV014

AY047304 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtggac cagatctgag cccgggagct ctctggctac ttagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AY047302(#3175) AY047303(#3176)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy