CESSHIV-1 database

General information on HIV-1 isolate

# 1998

Accession number	AY610967
Name	03SP100655
Subtype	A
Country	Spain (Mozambique)
Sampling year	2003

AY610967 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttggac cagata-gagc ctgggagctc tctggctagc aagggaaccc actgcttaag cctcaataaa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Core poly(A) site

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy