CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 392
Accession number AY623602
Name pCMO2.5
SubtypeGroup O
CountryCameroon
Submitted to NCBI 2004
PatientMVP8913
CommentsExperimental

AY623602 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ccgggtcttg gttagaggac caggtttgag cccgggagct ccctgacctc tagccgaacc cgctgcttaa cgctcaataa agcttgcctt t-gagtgagaa gcagtgtgtg ctcatctgtt ca---accctggt gt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012