CESSHIV-1 database

General information on HIV-1 isolate

# 2112

Accession number	AY921352
Name	TZMoL47087
Subtype	CRF10_CD
Country	Tanzania
Sampling year	2000
Patient	87

AY921352 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatctgag cccgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctctg agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AM076859(#1561) AM076860(#1562) AM076866(#1568)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy