CESSHIV-1 database

General information on HIV-1 isolate

# 2187

Accession number	AY932717
Name	TZLM607
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	607

AY932717 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatctgag cctgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB191653(#1179) AB485647(#2727) AF239627(#1949) AY047300(#3156)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy