CESSHIV-1 database

General information on HIV-1 isolate

# 1090

Accession number	BD437615
Name	TV001 patent
Subtype	C
Country	Japan
Submitted to NCBI	2004
Patient	TV001
Comments	Patent

BD437615 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctcggtagac cagatctgag cctgggagcc ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccatctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AX455917(#1084) AY047308(#3184) AY162223(#239)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy