CESSHIV-1 database

General information on HIV-1 isolate

# 3472

Accession number	DQ287304
Name	C98_7_1993
Subtype	B
Country	Australia
Sampling year	1993
Patient	C98

DQ287304 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctga ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB480692(#2717) AB480693(#2718) L28880(#2448) L28913(#2481) U80533(#2552) U81475(#2580)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy