CESSHIV-1 database

General information on HIV-1 isolate

# 2992

Accession number	DQ287309
Name	C98_10_1998
Subtype	B
Country	Australia
Sampling year	1998
Patient	C98

DQ287309 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtcact ctggttagac cagatctaag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

DQ287308(#2991)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy