CESSHIV-1 database

General information on HIV-1 isolate

# 1435

Accession number	DQ853467
Name	14199_1
Subtype	B
Country	USA
Sampling year	1998
Patient	PIC1362

DQ853467 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing Core poly(A) site

The primary sequence:

ccgggtctct ctggttagac c-gatctgagc ctgggagctc tctggctagc tggggaaccc actgcttaag cctcaataaa gcttgccttg agtgcttcaa gtagtgtgtg cccatctgtt gtgtgactct ggtag

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy