CESSHIV-1 database

General information on HIV-1 isolate

# 2225

Accession number	EF192592
Name	CU98_26 clone 8
Subtype	01B
Country	Thailand
Submitted to NCBI	2006
Patient	CU98_26

EF192592 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac caggt-tgagc ccgggagctc tctggctagc aagggaaccc actgcttaaa gcctcaataa agcttgcctt gagtgcttaa agtggtgtgt gcccgtctgt gttaggactc tggtaa

Isolates with identical sequences of region:

AF196744(#1310) EF192591(#2224) EU031914(#1028)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Core poly(A) site

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy