CESSHIV-1 database

General information on HIV-1 isolate

# 1452

Accession number	EF370177
Name	03CSR3_2874
Subtype	B
Country	South Korea (USA)
Sampling year	2003
Patient	HP-21(CSR)

EF370177 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tatgtgactc tggtaa

Isolates with identical sequences of region:

AF075719(#32) EU047608(#1811)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy