CESSHIV-1 database

General information on HIV-1 isolate

# 1768

Accession number	EF370323
Name	01LHS2_2437
Subtype	B
Country	South Korea
Sampling year	2001
Patient	LHS

EF370323 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatcagag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtgtgactc cggtacttag actctggtaa 

Isolates with identical sequences of region:

AY839827(#1416) EF370325(#1769)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Core poly(A) site

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy