CESSHIV-1 database

General information on HIV-1 isolate

# 2261

Accession number	EF370348
Name	06PHT1_2922s1
Subtype	B
Country	South Korea
Sampling year	2006
Patient	PHT

EF370348 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccatctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

EF370331(#1774) EF370338(#1777)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy