CESSHIV-1 database

General information on HIV-1 isolate

# 2262

Accession number	EF370385
Name	05KBHn5_2924s
Subtype	B
Country	South Korea
Sampling year	2005
Patient	KBH

EF370385 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatcagag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

EF370213(#2234) EF370214(#1715) EF370215(#2235) EF370313(#1761)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy