CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2263
Accession number EF370389
Name 06CYS6_2738
SubtypeB
CountrySouth Korea
Sampling year 2006
PatientCYS

EF370389 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa agcctcaata aagcttgcct tgagtgcttg aagtagtgtg tgcccatctg ttgtgtgact ctggtaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy