CESSHIV-1 database

General information on HIV-1 isolate

# 3144

Accession number	EF592597
Name	A6
Subtype	A
Country	India
Submitted to NCBI	2007

EF592597 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttggtagac cagat-tgagc ctgggagctc tctggctagc gagggaaccc actgcttaag cctcaataaa gcttgccttg agtgcttcaa gtagtgtgtg cccgtctgtt gtgtgactct ggtaa

Isolates with identical sequences of region:

EF592598(#3145)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy