CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3019
Accession number EF592601
Name C31
SubtypeC
CountryIndia
Submitted to NCBI 2007

EF592601 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatctgag cctgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgttctg agcagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB191684(#1374)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012