CESSHIV-1 database

General information on HIV-1 isolate

# 1839

Accession number	EU047641
Name	02OSG1_3333
Subtype	B Korean
Country	South Korea
Sampling year	2002
Patient	DNR-O(OSG)

EU047641 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatcagag cctgggagct ctctggctga ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

EU047639(#1837)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy