CESSHIV-1 database

General information on HIV-1 isolate

# 1874

Accession number	EU047648
Name	06JWK12_3213
Subtype	B Korean
Country	South Korea
Sampling year	2006
Patient	WK(JWK)

EU047648 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

DQ295194(#571) EF370183(#1456) EF370184(#2228) EF370187(#2229) EF370197(#2231) EF370198(#1710) EF370233(#1722) EF370237(#3012) EF370242(#1719) EF370249(#1727) EF370285(#2253) EF370289(#1743) EF370300(#1751) EF370305(#1753) EF370360(#1779) EF370369(#1796) EU047626(#1828) EU047627(#1829) EU047628(#1830) EU047629(#1831) EU047630(#1832) EU047633(#2942) EU047634(#1833) EU047645(#1843) EU047649(#1845) EU047657(#2943) EU047666(#1865) EU047685(#1881) EU047692(#1887) L28883(#2451) L28884(#2452) L28894(#2462) L28895(#2463) L28898(#2466) L28899(#2467) L28903(#2471) L28910(#2478) L28911(#2479) L28912(#2480) L28917(#2485) U80532(#2551)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy