CESSHIV-1 database

General information on HIV-1 isolate

# 2272

Accession number	EU047665
Name	07KYY4_3346
Subtype	B Korean
Country	South Korea
Sampling year	2007
Patient	KYY(KR4)

EU047665 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

U80517(#2536) U81464(#2569)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy