CESSHIV-1 database

General information on HIV-1 isolate

# 1883

Accession number	EU047687
Name	95CWS4_3143
Subtype	B Korean
Country	South Korea
Sampling year	1995
Patient	CWS

EU047687 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctga ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB287364(#930) AB287365(#931) EF125628(#3457) EF125629(#3458) EF125630(#3459) EF370244(#1721) EF370245(#2240) EF370246(#1725) EF370251(#2242) EF370260(#1732) EU047638(#2271) EU047650(#1846) EU047651(#1847) EU047652(#1848) EU047688(#1884) L28916(#2484) U81474(#2579)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy