CESSHIV-1 database

General information on HIV-1 isolate

# 3464

Accession number	EU807770
Name	Progressor_20
Subtype	B
Country	USA
Submitted to NCBI	2008
Patient	P

EU807770 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctagctggac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

EU807771(#3465) EU807772(#3466) EU807773(#3467) EU807774(#3468)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy