CESSHIV-1 database

General information on HIV-1 isolate

# 2300

Accession number	EU938104
Name	03RU1109
Subtype	A
Country	Russia
Sampling year	2003

EU938104 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatc-gagc ctgggagctc tctggctagc tagggaaccc actgcttaag cctcaataaa gcttgccttg agtgctttaa gtagtgtgtg cccgtctgtt gtatgactct ggtaa

Isolates with identical sequences of region:

AF413990(#1355) EU938080(#2276) EU938086(#2282) EU938087(#2283) EU938093(#2289) EU938094(#2290) EU938095(#2291) EU938098(#2294) EU938099(#2295) EU938102(#2298) EU938107(#2303) EU938109(#2305) EU938110(#2306) EU938112(#2308) EU938118(#2314) HM583636(#3876)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy