CESSHIV-1 database

General information on HIV-1 isolate

# 2315

Accession number	EU938119
Name	04RU1139
Subtype	A
Country	Russia
Sampling year	2004

EU938119 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagat-tgagc ctgggagctc tctggctagc tagggaaccc actgcttaag cctcaataaa gcttgccttg agtgctttaa gtagtgtgtg cccgtctgtt gtatgactct ggtaa

Isolates with identical sequences of region:

HM583631(#3871)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy