CESSHIV-1 database

General information on HIV-1 isolate

# 3047

Accession number	FJ432057
Name	NII_PGI_IND_VT2
Subtype	C
Country	India
Sampling year	2008
Patient	VT2

FJ432057 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatctgag cctgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctctg agcagtgtgt gcccgtctat tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB023804(#71) EU574917(#3024) EU835832(#2958) EU835837(#2962) EU835843(#3032) FJ210864(#3000) FJ210866(#3043) FJ210867(#3044) FJ432056(#2966) FJ432063(#3053) FJ432064(#2967)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy