CESSHIV-1 database

General information on HIV-1 isolate

# 2338

Accession number	FJ614916
Name	06LKD11_4096
Subtype	CRF02_AG
Country	South Korea (Ghana)
Sampling year	2006
Patient	LKD

FJ614916 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatttgag cctgggagct ctctgactag cg-gagaaccc actgcttaag cctcaataaa gcttgccttg agtgcttaaa gtagtgtgtg cccgtctgtt gtgtgactct ggtaa

Isolates with identical sequences of region:

EF370355(#1790) EF370356(#1791) FJ614891(#2323) FJ614894(#2325) FJ614895(#2326) FJ614912(#2335)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy