CESSHIV-1 database

General information on HIV-1 isolate

# 2371

Accession number	FJ614952
Name	05MHI10_4086
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2005
Patient	MHI

FJ614952 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatttgag cctgggagct ctctgactag cagaggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB485636(#2739) AB485637(#2740) FJ614926(#2343) FJ614927(#2344) FJ614930(#2347) FJ614931(#2348) FJ614932(#2349) FJ614934(#2351) FJ614940(#2357) FJ614942(#2359) FJ614943(#2360) FJ614946(#2363) FJ614949(#2366) FJ614951(#2370) FJ614953(#2372) FJ614954(#2373) FJ614959(#2382) FJ614963(#2385) FJ614968(#2389) FJ614971(#2391)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy