CESSHIV-1 database

General information on HIV-1 isolate

# 2402

Accession number	FJ614987
Name	05KSN5_4248
Subtype	CRF02_AG
Country	South Korea (Gabon)
Sampling year	2005
Patient	KSN

FJ614987 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatttgag cctgggagct ctctgactag caggggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AY611004(#3138) FJ614886(#2510) FJ614887(#1911) FJ614982(#2398) FJ614988(#2403)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy