CESSHIV-1 database

General information on HIV-1 isolate

# 3288

Accession number	GQ365649
Name	02_BR_HF31
Subtype	BC
Country	Brazil
Sampling year	2002

GQ365649 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctctg agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy